|
CURRICULUM VITAE
Personal data
|
| Name: | | Dipl.-Bioinf. Maik Friedel |
| E-Mail: | | maikfr 'at' fli-leibniz 'dot' de |
Education |
| since 10/2009 | | Bioinformatics Manager, BASF Plant Science / SunGene GmbH |
| 9/2006-9/2009 | | PhD-student at the Leibniz Institute for Age Research, Fritz Lipmann Institute (FLI) - Jena
in the Biocomputing group of Dr. J. Sühnel |
| | Topic: |
| | Analysing nucleotide sequences with help of dinucleotide properties
(Analyse von Nukleotidsequenzen mit Hilfe von Dinukleotideigenschaften) |
| | Supervised by: |
| | Dr. T. Wilhelm (IFR, Norwich UK) |
| | Dr. J. Sühnel (FLI, Jena Germany) |
| | Prof. S. Schuster (FSU, Jena Germany) |
| 9/2000–12/2005 | | Diploma-student at the Friedrich Schiller University of Jena, Germany |
| | M.Sc of Bioinformatics (diploma) |
| | diploma thesis:
Analysis of Boolean functions - general pattern recognition and classification of gene regulatory rules
(supervised by Dr. T. Wilhelm, Prof. S. Schuster) |
| 9/1991–7/1999 | | General qualification for university entrance |
| | Christian-Gottlieb-Reichard Gymnasium (grammar school) in Bad Lobenstein
Major courses: mathematics and biology |
| | |
| | |
Practical courses and work experience |
| 14-18/05/2007 | | Course: Introduction to genome browsers (Bioinformatics Org., Inc.) |
| 2/2006-8/2006 | | Employment as research associate at the FLI Jena in the working group Theoretical Systems Biology of Dr. Wilhelm |
| 9/2002–2/2006 | | Practical course at the Leibniz-Institute for Age Research Fritz-Lipmann-Institut e.V. (FLI) |
| 2003 | | Database systems practical course with exams and presentation
(E/R-Modells, DB2 Unix, SQL, SQLJ and JDBC in Java, HTML, PHP, PHP-ODBC) |
| | |
| | |
Skills |
| Foreign languages | | German (native language), English (fluently), Russian (basic knowledge), French (basic knowledge) |
| Operation systems | | Windows, DOS, UNIX (Linux) |
| Programming in | | C, C++ (also API, MFC), Python, Java, Delphi, HTML, PHP, R |
| Databases | | DB2, SQL (mySQL) |
| Applications | | MsOffice, LaTeX, Maple, CorelDRAW, ... |
| | |
| | |
Publications |
| Patent: | | |
| | Provisional Application |
| Inventor | | M. Friedel & T. Wilhelm |
| Title | | Lead Structures for Drugs |
| Appl. No. | | 60/829,894 |
| | |
| | |
| Articles: | | |
| | DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data |
| | J. Hollunder, M. Friedel, M. Kuiper and T. Wilhelm |
| | Bioinformatics 2010; 26(7):987-989 |
| | The Smallest Known Genomes of Multicellular and Toxic Cyanobacteria: Comparison, Minimal Gene Sets for Linked Traits and the Evolutionary Implications |
| | K. Stucken, U. John, A. Cembella, A.A. Murillo, K. Soto-Liebe, J.J. Fuentes-Valdes, M. Friedel, A.M. Plominsky, M. Vasquez and G. Glöckner |
| | PLoS ONE 2010; 5(2):e9235 |
| | DiProGB: The Dinucleotide Properties Genome Browser |
| | M. Friedel, S. Nikolajewa, J. Sühnel and T. Wilhelm |
| | Bioinformatics 2009; doi: 10.1093/bioinformatics/btp436 |
| | DiProDB: a database for dinucleotide properties |
| | M. Friedel, S. Nikolajewa, J. Sühnel and T. Wilhelm |
| | Nucleic Acids Research 2009 Jan; 37(Database issue):D37-40 |
| | The Decomposition Tree for Analyses of Boolean Functions |
| | M. Friedel, S. Nikolajewa, T. Wilhelm |
| | Math. Struct. in Comp. Science 2008 April; 18(2):411-426 |
| | DASS: efficient discovery and p-value calculation of substructures in unordered data |
| | J. Hollunder, M. Friedel, A. Beyer, C. Workman, T. Wilhelm |
| | Bioinformatics 2007 Jan 1; 23(1):77-83 |
| | Boolean Networks with biologically relevant rules show ordered behavior |
| | S. Nikolajewa, M. Friedel, T. Wilhelm |
| | Biosystems 2007 July-August; 90(1):40-47 |
| | The new classification scheme of the genetic code its early evolution, and tRNA usage |
| | S. Nikolajewa, M. Friedel, A. Beyer, T. Wilhelm |
| | Journal of Bioinformatics and Computational Biology 2006 Apr;4(2):609-20 |
| | Common patterns in type II restriction enzyme binding sites |
| | S. Nikolajewa, A. Beyer, M. Friedel, J. Hollunder, T. Wilhelm |
| | Nucleic Acids Research 2005 May 11; 33(8):2726-33 |
| | |
| | |
| Posters: | | |
| | A new way of seeing genomes - Combining sequence- and signal-based genome analyses |
| | M. Friedel, T. Wilhelm, J. Sühnel |
| | presented at: MCCMB in Moscow 2009 Download |
| | Analysing gene expression patterns using the Dinucleotide Properties Genome Browser (DiProGB) |
| | M. Friedel, S. Nikolajewa, T. Wilhelm, J. Sühnel |
| | presented at: FLI retreat in Bad Blankenburg 2009 Download |
| | A new way of seeing genomes (DiProDB and DiProGB) |
| | M. Friedel, T. Wilhelm, J. Sühnel |
| | presented at: ISMB08 in Toronto 2008 Download |
| | A new way of seeing the genome |
| | M. Friedel, T. Wilhelm, J. Sühnel |
| | presented at: FLI retreat in Bad Blankenburg 2007 Download |
| | Early evolution of translation |
| | M. Friedel, S. Nikolajewa, T. Wilhelm |
| | presented at: Final evaluation of the BMBF centres bioinformatics 2007 Download |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |
| | |